| School Name | Sub-County | School Level | |
|---|---|---|---|
| 1 | Bbm Mulwanda | Khwisero | Primary |
| 2 | Boston School Butere | Khwisero | Primary |
| 3 | Eagles Academy | Khwisero | Primary |
| 4 | Ebushibungo Adc Academy | Khwisero | Primary |
| 5 | Edas Hill Academy | Khwisero | Primary |
| 6 | Emahene Revelation | Khwisero | Primary |
| 7 | Emukhunzulu Education Centre | Khwisero | Primary |
| 8 | Eshibinga Shining Star | Khwisero | Primary |
| 9 | Eshibinga St. Patrick Education Centre | Khwisero | Primary |
| 10 | Glorious Life | Khwisero | Primary |
| 11 | Junior Academy Manyulia | Khwisero | Primary |
| 12 | Kings and Queens Education Centre Emwaniro | Khwisero | Primary |
| 13 | Metameta Academy- Munjiti | Khwisero | Primary |
| 14 | Milele Academy | Khwisero | Primary |
| 15 | Prince Of Peace Junior Academy | Khwisero | Primary |
| 16 | Rozina Academy | Khwisero | Primary |
| 17 | Shalom Academy Ekambuli | Khwisero | Primary |
| 18 | Sharudi Primary School | Khwisero | Primary |
| Primary Schools in Khwisero Sub County |
| List of Public Primary Schools in Khwisero |
| List of Private Primary Schools in Khwisero |
| Junior Secondary Schools (JSS) in Khwisero Sub County |
| List of Public JSS Schools in Khwisero |
| List of Private JSS Schools in Khwisero |
| High Schools in Khwisero Sub County |
| List of Public High Schools in Khwisero |
| List of Private High Schools in Khwisero |