| School Name | Sub-County | School Level | |
|---|---|---|---|
| 1 | AIC Bugaa Mixed Secondary School | Mt Elgon | Secondary |
| 2 | Bishop Okiring Kamuneru | Mt Elgon | Secondary |
| 3 | Chemoge Secondary School | Mt Elgon | Secondary |
| 4 | Chepkarai PAG Secondary School | Mt Elgon | Secondary |
| 5 | Chesito Secondary School | Mt Elgon | Secondary |
| 6 | Friends Moi High Kaptama | Mt Elgon | Secondary |
| 7 | JB Serut Chemweisus SA Secondary School | Mt Elgon | Secondary |
| 8 | Kaboiywo Secondary School | Mt Elgon | Secondary |
| 9 | Kaborom Secondary School | Mt Elgon | Secondary |
| 10 | Kapsokwony Secondary School | Mt Elgon | Secondary |
| 11 | Kaptalelio Girls Secondary School | Mt Elgon | Secondary |
| 12 | Kaptola Secondary School | Mt Elgon | Secondary |
| 13 | Kimobo Friends Secondary School | Mt Elgon | Secondary |
| 14 | Kongit Secondary School | Mt Elgon | Secondary |
| 15 | Moi Kaptama Girls Secondary School | Mt Elgon | Secondary |
| 16 | Sendera Secondary School | Mt Elgon | Secondary |
| 17 | St Augustine Secondary School | Mt Elgon | Secondary |
| 18 | St Marks Kipchiria Secondary School | Mt Elgon | Secondary |
| 19 | St. Mary's Kibuk Girls | Mt Elgon | Secondary |
| Primary Schools in Mt Elgon Sub County |
| List of Public Primary Schools in Mt Elgon |
| List of Private Primary Schools in Mt Elgon |
| Junior Secondary Schools (JSS) in Mt Elgon Sub County |
| List of Public JSS Schools in Mt Elgon |
| List of Private JSS Schools in Mt Elgon |
| High Schools in Mt Elgon Sub County |
| List of Public High Schools in Mt Elgon |
| List of Private High Schools in Mt Elgon |