| School Name | Sub-County | School Level | |
|---|---|---|---|
| 51 | St. Ann (Mida) | Malindi | Primary |
| 52 | St. Dominic | Malindi | Primary |
| 53 | St. Johns Catholic | Malindi | Primary |
| 54 | St. Mary's Help Of Christian Catholic School | Malindi | Primary |
| 55 | St. Marys Catholic | Malindi | Primary |
| 56 | St. Paul Kindergaten and | Malindi | Primary |
| 57 | Tahdhib Muslim Academy | Malindi | Primary |
| 58 | The Malindi Glorious Junior School | Malindi | Primary |
| 59 | Timboni Sawa Sawa | Malindi | Primary |
| 60 | Town Primary School | Malindi | Primary |
| 61 | Ummul Qu Ra Education Centre | Malindi | Primary |
| 62 | Upendo Hidden Academy | Malindi | Primary |
| 63 | Watamu SDA Junior | Malindi | Primary |
| 64 | Wings Of Mercy | Malindi | Primary |
| 65 | Zafanana Star | Malindi | Primary |
| Primary Schools in Malindi Sub County |
| List of Public Primary Schools in Malindi |
| List of Private Primary Schools in Malindi |
| Junior Secondary Schools (JSS) in Malindi Sub County |
| List of Public JSS Schools in Malindi |
| List of Private JSS Schools in Malindi |
| High Schools in Malindi Sub County |
| List of Public High Schools in Malindi |
| List of Private High Schools in Malindi |