| School Name | Sub-County | Sponsorship | |
|---|---|---|---|
| 51 | Mwavunyu Junior Secondary School | Mwatate Sub County | Public |
| 52 | Mwawache Junior Secondary School | Mwatate Sub County | Public |
| 53 | Mwemba Junior Secondary School | Mwatate Sub County | Public |
| 54 | Mzwanenyi Junior Secondary School | Mwatate Sub County | Public |
| 55 | Nyolo Junior Secondary School | Mwatate Sub County | Public |
| 56 | Rahai Junior Secondary School | Mwatate Sub County | Public |
| 57 | Ronge Junior Secondary School | Mwatate Sub County | Public |
| 58 | Sechu Junior Secondary School | Mwatate Sub County | Public |
| 59 | Shelemba Junior Secondary School | Mwatate Sub County | Public |
| 60 | St. Josephs Junior Secondary School | Mwatate Sub County | Public |
| 61 | Vichwala Junior Secondary School | Mwatate Sub County | Public |
| 62 | Wumari Junior Secondary School | Mwatate Sub County | Public |
| 63 | Wusi Junior Secondary School | Mwatate Sub County | Public |
| 64 | Zare Junior Secondary School | Mwatate Sub County | Public |
| Primary Schools in Mwatate County |
| List of Public Primary Schools in Mwatate |
| List of Private Primary Schools in Mwatate |
| Junior Secondary Schools (JSS) in Mwatate County |
| List of Public JSS Schools in Mwatate |
| List of Private JSS Schools in Mwatate |
| High Schools in Mwatate County |
| List of Public High Schools in Mwatate |
| List of Private High Schools in Mwatate |