| School Name | Sub-County | Sponsorship | |
|---|---|---|---|
| 1 | County Hills Academy Junior Secondary School | Mwatate Sub County | Private |
| 2 | Mother Teresa Junior Secondary School | Mwatate Sub County | Private |
| 3 | Mwatate Academy Junior Secondary School | Mwatate Sub County | Private |
| Primary Schools in Mwatate County |
| List of Public Primary Schools in Mwatate |
| List of Private Primary Schools in Mwatate |
| Junior Secondary Schools (JSS) in Mwatate County |
| List of Public JSS Schools in Mwatate |
| List of Private JSS Schools in Mwatate |
| High Schools in Mwatate County |
| List of Public High Schools in Mwatate |
| List of Private High Schools in Mwatate |