| School Name | Sub-County | Sponsorship | |
|---|---|---|---|
| 1 | Rodham&michelle Junior Secondary School | Mutito Sub County | Private |
| 2 | St. Josephine Bakhita Junior Secondary School | Mutito Sub County | Private |
| 3 | Vema Academy Junior Secondary School | Mutito Sub County | Private |
| Primary Schools in Mutito County |
| List of Public Primary Schools in Mutito |
| List of Private Primary Schools in Mutito |
| Junior Secondary Schools (JSS) in Mutito County |
| List of Public JSS Schools in Mutito |
| List of Private JSS Schools in Mutito |
| High Schools in Mutito County |
| List of Public High Schools in Mutito |
| List of Private High Schools in Mutito |